Panoptes

Panoptes is a web application for exploration and visualisation of data. Many of the features, such as querying and browsing tables, are generic and can be used with any kind of data. There are also some specialised features for genomic and geospatial data.

Caution

Panoptes is still in an early stage of development. It should currently be considered as a prototype, unfit for production deployments.

We welcome early adopters, however please bear in mind that the design and configuration of the web application are still in flux and may change substantially. As our current focus is on developing the code, we can only offer limited support. For more information about the project please send an email to the public mailing list <panoptes-dev@googlegroups.com>.

• Source code: https://github.com/cggh/panoptes
• Documentation: http://panoptes.readthedocs.org
• Mailing list: https://groups.google.com/forum/#!forum/panoptes-dev

Contents

• Introduction
  • List of basic features
• Installation and deployment guide
  • Deployment on a new Ubuntu image
  • Short debain/ubuntu guide for the temporarly challenged
  • Basic installation
  • Authorization
• Loading data
  • Panoptes data concepts
  • Importing datasets
  • Editing the source directory structure
  • Using the Panoptes admin web frontend
• Source files structure
  • Dataset source files
  • Reference genome source files
  • Data table source files
  • 2D data table source files
  • Workspace source files
  • Custom data source files
  • Documentation source files
• Data import settings
  • General dataset settings
  • Data table settings
  • 2D Datatable settings
  • Workspace settings
  • Reference genome settings
  • Custom data settings

License

Panoptes © Copyright 2014, CGGH <info@cggh.org>

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

A copy of the license is at http://opensource.org/licenses/AGPL-3.0